Multi-file plugins

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Should I provide myplugin.php with a “myplugin” folder, the first then requiring the proper scripts in “myplugin”?

Many plugins already come together with a folder to hold other files. So yes, that’s the best way to go.

You are right, it might be cleaner to check for folders within the plugins folder. Good idea that will be taken in consideration for the next update of the plugin system.